| Software |
Description |
Contact |
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| AngioQuant |
AngioQuant is an automated image analysis tool for quantification of angiogenesis. It is designed for in vitro angiogenesis assays that are based on co-culturing endothelial cells with fibroblasts. |
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| BioTapestry |
BioTapestry is an interactive tool for building, visualizing, and simulating genetic regulatory networks. |
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| Cytoscape |
Cytoscape is an open source bioinformatics software platform for visualizing molecular interaction networks and integrating these interactions with gene expression profiles and other state data. |
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| Innate Immune Database (IIDB) |
The Innate Immune Database (IIDB) is a repository of genomic annotations and experimental data for over 2000 genes associated with immune response behavior in the mouse genome. |
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| Dizzy |
Dizzy is a chemical kinetics stochastic simulation software package written in Java. It provides a model definition environment and an implementation of the Gillespie, Gibson-Bruck, and Tau-Leap stochastic algorithms. |
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| ISB Java |
The ISBJava project is a library (collection) of classes written in the Java programming language, that are intended to be used for research in computational biology. |
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| Mogul Project |
Mogul is a software tool that integrates multiple transcription factor binding site prediction algorithms into a common framework. |
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| ProbCD |
ProbCD is a R package for Probabilistic Categorical Data analysis. ProbCD calculates the statistical association (correlation is one type of association measurement) between the properties encoded in the rows and columns of a k x 2 contingency table in which there is uncertainty in placing each element in any of the 2k possible table cells. |
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| ProbTF |
ProbTF is a web server that enables the analysis of DNA sequences using mouse-specific position weight matrices from the TRANSFAC™ database. |
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| SimCluster |
Simcluster is a package for clustering analysis of transcript enumeration data on the simplex space. |
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